A learning and diagnostic program for computer-assisted functional analysis of the craniomandibular system (CMS) is presented. The development and functionality of the program modules of "Anatomy and structural physiology of the CMS", "Learning program for manual functional analysis of the CMS" as well as "Computer-assisted functional diagnostics of the CMS" are described. The second part of the article is concerned with experience in practical use of the software at the treatment center. Keywords: manual functional analysis, learning software, computerassisted functional diagnostics, standardization